About me
Currently I am a Postdoc of the Institute for Al Industry Research (AIR) in Tsinghua University. Before that, I received the Ph.D. degree from the AI school in Nanjing University and was a member of NJUNLP Group. Before that, I received the B.Sc. degree from the school of computer science and technology in Xi’an Jiaotong University.
My research focuses on the exploration and development of generative and pre-trained models, aiming to deeply understand their wide applications in the scientific domain. This includes utilizing generative models for targeted drug design, innovative protein structure design, and the construction of pre-trained models for biological structures.
Education
- Postdoc, Tsinghua University, 2025 - present
- Ph.D., Nanjing University, 2019 - 2024
- B.S., Xi’an Jiaotong University, 2015 - 2019
Internships
- Tsinghua, Institute for Al Industry Research (AIR), 2023 - 2024
- ByteDance AI Lab, 2021 - 2023
Academic Services
- Conference Reviewer: NeurIPS, ICML, ICLR, ACL, EMNLP
Publications
You can also find my articles on my Google Scholar profile.
Steering Protein Family Design through Profile Bayesian Flow
Jingjing Gong∗, Yu Pei∗, Siyu Long∗, Yuxuan Song∗, Zhe Zhang, Wenhao Huang, Ziyao Cao, Shuyi Zhang, Hao Zhou, Wei-Ying Ma (* equal contribution)
ICLR(oral), 2025Deep Neural Networks for Knowledge-Enhanced Molecular Modeling
Siyu Long, Jianyu Wu, Yi Zhou, Fan Sha, Xinyu Dai
Neurocomputing, 2024Mol-AE: Auto-Encoder Based Molecular Representation Learning With 3D Cloze Test Objective
Junwei Yang, Kangjie Zheng, Siyu Long, Zaiqing Nie, Ming Zhang, Xinyu Dai, Wei-Ying Ma, Hao Zhou
ICML, 2024ESM All-Atom: Multi-scale Protein Language Model for Unified Molecular Modeling
Siyu Long∗, Kangjie Zheng∗, Tianyu Lu, Junwei Yang, Xinyu Dai, Ming Zhang, Zaiqing Nie, Wei-Ying Ma, Hao Zhou (* equal contribution)
ICML, 2024Zero-Shot 3D Drug Design by Sketching and Generating
Siyu Long, Yi Zhou, Xinyu Dai, Hao Zhou
NeurIPS(spotlight), 2022Learning from Adjective-Noun Pairs: A Knowledge-enhanced Framework for Target-Oriented Multimodal Sentiment Classification
Fei Zhao, Zhen Wu, Siyu Long, Xinyu Dai, Shujian Huang and Jiajun CHEN
COLING, 2022Meta-LMTC: Meta-Learning for Large-Scale Multi-Label Text Classification
Ran Wang, Xi’ao Su, Siyu Long, Xinyu Dai, Shujian Huang, Jiajun Chen
EMNLP, 2021Synonym Knowledge Enhanced Reader for Chinese Idiom Reading Comprehension
Siyu Long∗, Ran Wang∗, Kun Tao, Jiali Zeng, Xin-Yu Dai (* equal contribution)
COLING(oral), 2020BED: Bi-Encoder-Decoder Model for Canonical Relation Extraction
Nantao Zheng, Siyu Long, Xinyu Dai
arXiv, 2020