About me

中文简历 English CV

Currently I am a Ph.D. student of the AI school in Nanjing University and a member of NJUNLP Group. Before that, I received the B.Sc. degree from the school of computer science and technology in Xi’an Jiaotong University.

My research focuses on the exploration and development of generative and pre-trained models, aiming to deeply understand their wide applications in the scientific domain. This includes utilizing generative models for targeted drug design, innovative protein structure design, and the construction of pre-trained models for biological structures.

Education

Ph.D. student, Nanjing University, 2019 - now
B.S., Xi’an Jiaotong University, 2015 - 2019

Internships

Tsinghua, Institute for Al Industry Research (AIR), 2023 - now
ByteDance AI Lab, 2021 - 2023

Academic Services

Conference Reviewer: NeurIPS, ICML, ICLR, ACL, EMNLP

Publications

You can also find my articles on my Google Scholar profile.

Deep Neural Networks for Knowledge-Enhanced Molecular Modeling

Siyu Long, Jianyu Wu, Yi Zhou, Fan Sha, Xinyu Dai
Neurocomputing, 2024

Mol-AE: Auto-Encoder Based Molecular Representation Learning With 3D Cloze Test Objective

Junwei Yang, Kangjie Zheng, Siyu Long, Zaiqing Nie, Ming Zhang, Xinyu Dai, Wei-Ying Ma, Hao Zhou
ICML, 2024

ESM All-Atom: Multi-scale Protein Language Model for Unified Molecular Modeling

Siyu Long∗, Kangjie Zheng∗, Tianyu Lu, Junwei Yang, Xinyu Dai, Ming Zhang, Zaiqing Nie, Wei-Ying Ma, Hao Zhou (* equal contribution)
ICML, 2024

Zero-Shot 3D Drug Design by Sketching and Generating

Siyu Long, Yi Zhou, Xinyu Dai, Hao Zhou
NeurIPS(spotlight), 2022

Learning from Adjective-Noun Pairs: A Knowledge-enhanced Framework for Target-Oriented Multimodal Sentiment Classification

Fei Zhao, Zhen Wu, Siyu Long, Xinyu Dai, Shujian Huang and Jiajun CHEN
COLING, 2022

Siyu Long